Publications from our group

Word cloud from the titles of our publications

This is a list of our papers, with group members in bold; click on the icon after each paper for a link to the original publication. If you are interested in the publications authored by a specific group member, go to their profile on the People page and follow their Google Scholar link.

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Hovhannisyan, A., Delser, PM., Hakobyan, A., Jones, ER., Schraiber, JG., Antonosyan, M., Margaryan, A., Xue, Z., Jeon, S., Bhak, J., Hrechdakian, P., Sahakyan, H., Saag, L., Khachatryan, Z., Yepiskoposyan, L., & Manica, A. (2025). Demographic history and genetic variation of the Armenian population. The American Journal of Human Genetics. 112 (1), 11-27

Stephenson, NP., Delahooke, KM., Buma-at, PA., Rideout, BWT., Barnes, N., Kenchington, CG., Manica, A., & Mitchell, EG. (2025). Recolonisation strategies of early animals in the Avalon (Ediacaran 574-560 Ma). bioRxiv. 2025.01. 30.635654

Mitchell, EG., & Manica, A. (2025). The influence of reproductive mode on resource competition and diversity patterns in Ediacaran early animal communities. bioRxiv. 2025.01. 08.632049

Möller, P., Palmbo, F., Nielsen, AB., Boman, E., Dong, H., Björck, S., Cai, Y., Grimbe, J., Macleod, R., Shen, M., Wang, Y., Westerlund, M., & Xue, Z. (2025). The Mesolithic Hunter–Gatherer Camp Site at Sammakko in Norrbotten, Northernmost Sweden—Archeological Finds and Palaeoenvironmental Reconstruction. Geoarchaeology. 40 (1), e22030

Riley, RJ., Kwon, YM., Manica, A., & Savage, JL. (2025). Familiarity dampens the effect of boldness on coordination in three-spined sticklebacks. Behaviour. 1, 1-16

Campbell, OLK., Padilla-Iglesias, C., Fiorio, G., & Mace, R. (2025). Genetic markers of cousin marriage and honour cultures (vol 45, 106636, 2024). EVOLUTION AND HUMAN BEHAVIOR. 46 (1)

Padilla-Iglesias, C., Blanco-Portillo, J., Pricop, B., Ioannidis, AG., Bickel, B., Manica, A., Vinicius, L., & Migliano, AB. (2024). Deep history of cultural and linguistic evolution among Central African hunter-gatherers. Nature Human Behaviour. 1-13

Fordham, DA., Brown, SC., Canteri, E., Austin, JJ., Lomolino, MV., Haythorne, S., Armstrong, E., Bocherens, Hé., Manica, A., Rey-Iglesia, A., Rahbek, C., Nogués-Bravo, D., & Lorenzen, ED. (2024). 52,000 years of woolly rhinoceros population dynamics reveal extinction mechanisms. Proceedings of the National Academy of Sciences. 121 (24), e2316419121

Leonardi, M., Colucci, M., Pozzi, AV., Scerri, EML., & Manica, A. (2024). tidysdm: Leveraging the flexibility of tidymodels for species distribution modelling in R. Methods in Ecology and Evolution. 15 (10), 1789-1795

Timbrell, L., Blinkhorn, J., Colucci, M., Leonardi, M., Chevalier, M., Grove, M., Scerri, E., & Manica, A. (2024). More is not always better: downscaling climate model outputs from 30 to 5-minute resolution has minimal impact on coherence with Late Quaternary proxies. Climate of the Past Discussions. 2024, 1-21

Gunasekaram, C., Battiston, F., Sadekar, O., Padilla-Iglesias, C., Noordwijk, MAv., Furrer, R., Manica, A., Bertranpetit, J., Whiten, A., Schaik, CPv., Vinicius, L., & Migliano, AB. (2024). Population connectivity shapes the distribution and complexity of chimpanzee cumulative culture. Science. 386 (6724), 920-925

Stephenson, NP., Delahooke, KM., Barnes, N., Rideout, BWT., Kenchington, CG., Manica, A., & Mitchell, EG. (2024). Morphology shapes community dynamics in early animal ecosystems. Nature Ecology & Evolution. 1-10

Bentley, LK., Phillips, RA., Carpenter‐Kling, T., Crawford, RJM., Cuthbert, RJ., Delord, K., Dilley, BJ., Makhado, AB., Miller, PI., Oppel, S., Pistorius, PA., Ryan, PG., Schoombie, S., Weimerskirch, H., & Manica, A. (2024). Habitat preferences of Phoebetria albatrosses in sympatry and allopatry. Journal of Biogeography.

Chiang, A., Haine, SS., Goldring, R., Jungwirth, A., Siddiqui, M., Wilkinson, G., Manica, A., & Riley, RJ. (2024). Comprehensive Husbandry Protocol for Corydoras Catfish and Many Other Amazonian Species. Journal of the American Association for Laboratory Animal Science. 63 (5 …

Khan, TM., Griffiths, HJ., Whittle, RJ., Stephenson, NP., Delahooke, KM., Purser, A., Manica, A., & Mitchell, EG. (2024). Network analyses on photographic surveys reveal that invertebrate predators do not structure epibenthos in the deep (~ 2000m) rocky Powell Basin, Weddell Sea, Antarctica. Frontiers in Marine Science. 11, 1408828

Fusco, M., Habte, B., Leplongeon, A., Menard, C., Manica, A., Spinapolice, EE., & Leonardi, M. (2024). The environmental context of the Middle-to-Late Stone Age Transition in eastern Africa: seasonality as a key factor. BioRXiv. 2024.12. 09.627606

Vizzari, MT., Ghirotto, S., Agostini, RB., Delser, PM., Cassidy, L., Manica, A., & Benazzo, A. (2024). Low-ABC: a robust demographic Inference from low-coverage whole-genome data through ABC. bioRxiv. 2024.08. 01.606209

Leonardi, M., Lycett, SJ., Manica, A., & Key, A. (2024). The Acheulean niche: climate and ecology predict handaxe production in Europe. bioRxiv. 2024.07. 19.604259

Padilla-Iglesias, C., & Bischoff, RJ. (2024). Hunter-gatherer mobility patterns influence the reconstruction of social networks from archaeological assemblages. Journal of Archaeological Science: Reports. 59, 104798

Padilla‐Iglesias, C., Basargekar, A., Woodward, AL., & Shneidman, LA. (2024). Exploring intra‐and inter‐cultural differences in toddlers’ time allocation in a Yucatec Maya and US community. Social Development. 33 (1), e12703

Padilla-Iglesias, C., & Derkx, I. (2024). Hunter–gatherer genetics research: Importance and avenues. Evolutionary Human Sciences. 6, e15

Campbell, OLK., Padilla-Iglesias, C., Fiorio, G., & Mace, R. (2024). Genetic markers of cousin marriage and honour cultures. Evolution and Human Behavior. 45 (6), 106636

Campbell, OLK., Padilla-Iglesias, C., Fiorio, G., & Mace, R. (2024). Corrigendum to “Genetic markers of cousin marriage and honour cultures”[Evolution & Human Behaviour (2024) Volume 45, Issue 6, 106,636].. Evolution and Human Behavior. 106637

Iglesias, CP., & Freeman, EC. (2024). Racing the clock. Science (New York, NY). 386 (6725), 1062

Iglesias, C Padilla. (2024). The Role of Mobility in Human Evolution: An Investigation Among Central African Hunter-Gatherers. University of Zurich.

Padilla-Iglesias, C., & Migliano, AB. (2024). Musical instruments, tools, language and genetic data reveal ancient hunter-gatherer networks. NATURE HUMAN BEHAVIOUR. 8 (7), 1245-1246

Clark, BL., Carneiro, APB., Pearmain, EJ., Rouyer, M-M., Clay, TA., Cowger, W., Phillips, RA., Manica, A., Hazin, C., Eriksen, M., González-Solís, J., Adams, J., Albores-Barajas, YV., Alfaro-Shigueto, J., Alho, MS., Araujo, DT., Arcos, JéM., Arnould, JPY., Barbosa, NJP., Barbraud, C., Beard, AM., Beck, J., Bell, EA., Bennet, DG., Berlincourt, M., Biscoito, M., Bjørnstad, OK., Bolton, M., Jones, KAB., Borg, JJ., Bourgeois, K., Bretagnolle, V., Bried, Jël., Briskie, JV., Brooke, MdL., Brownlie, KC., Bugoni, L., Calabrese, L., Campioni, L., Carey, MJ., Carle, RD., Carlile, N., Carreiro, AR., Catry, P., Catry, T., Cecere, JG., Ceia, FR., Cherel, Y., Choi, C-Y., Cianchetti-Benedetti, M., Clarke, RH., Cleeland, JB., Colodro, V., & Congdon, B. (2023). Global assessment of marine plastic exposure risk for oceanic birds. Nature Communications. 14 (1), 3665

Leonardi, M., Hallett, EY., Beyer, R., Krapp, M., & Manica, A. (2023). pastclim 1.2: an R package to easily access and use paleoclimatic reconstructions. Ecography. 2023 (3), e06481

Cerasoni, JNò., Hallett, EY., Orijemie, EA., Ashastina, K., Lucas, M., Farr, L., Höhn, A., Kiahtipes, CA., Blinkhorn, J., Roberts, P., Manica, A., & Scerri, EML. (2023). Human interactions with tropical environments over the last 14,000 years at Iho Eleru, Nigeria. Iscience. 26 (3)

Mashoodh, R., Trowsdale, AT., Manica, A., & Kilner, RM. (2023). Parental care shapes the evolution of molecular genetic variation. Evolution Letters. 7 (6), 379-388

Bentley, LK., Manica, A., Dilley, BJ., Ryan, PG., & Phillips, RA. (2023). Divergent foraging habitat preferences between summer‐breeding and winter‐breeding Procellaria petrels. Ibis. 165 (2), 618-628

Leedham, S., Paijmans, JLA., Manica, A., & Leonardi, M. (2023). Niche conservatism in a generalist felid: low differentiation of the climatic niche among subspecies of the leopard (Panthera pardus). bioRxiv. 2023.01. 26.525491

Mitchell, E., & Manica, A. (2023). The Influence of Stoloniferous Reproduction on Ediacaran Eco-Evolutionary Dynamics. Geological Society of America Abstracts. 55, 390870

Beyer, RM., Hua, F., Martin, PA., Manica, A., & Rademacher, T. (2022). Relocating croplands could drastically reduce the environmental impacts of global food production. Communications Earth & Environment. 3 (1), 49

Degroot, D., Anchukaitis, KJ., Tierney, JE., Riede, F., Manica, A., Moesswilde, E., & Gauthier, N. (2022). The history of climate and society: a review of the influence of climate change on the human past. Environmental Research Letters. 17 (10), 103001

Fordham, DA., Brown, SC., Akçakaya, HRşi., Brook, BW., Haythorne, S., Manica, A., Shoemaker, KT., Austin, JJ., Blonder, B., Pilowsky, JA., Rahbek, C., & Nogues‐Bravo, D. (2022). Process‐explicit models reveal pathway to extinction for woolly mammoth using pattern‐oriented validation. Ecology Letters. 25 (1), 125-137

Padilla-Iglesias, C., Atmore, LM., Olivero, Jús., Lupo, K., Manica, A., Isaza, EíaA., Vinicius, L., & Migliano, AB. (2022). Population interconnectivity over the past 120,000 years explains distribution and diversity of Central African hunter-gatherers. Proceedings of the National Academy of Sciences. 119 (21), e2113936119

Timbrell, L., Grove, M., Manica, A., Rucina, S., & Blinkhorn, J. (2022). A spatiotemporally explicit paleoenvironmental framework for the Middle Stone Age of eastern Africa. Scientific Reports. 12 (1), 3689

Eden, R., Manica, A., & Mitchell, EG. (2022). Metacommunity analyses show an increase in ecological specialisation throughout the Ediacaran period. PLoS Biology. 20 (5), e3001289

Wang, Y., Korneliussen, TS., Holman, LE., Manica, A., & Pedersen, MW. (2022). ngsLCA—A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data. Methods in Ecology and Evolution. 13 (12), 2699-2708

Leonardi, M., Boschin, F., Boscato, P., & Manica, A. (2022). Following the niche: the differential impact of the last glacial maximum on four European ungulates. Communications Biology. 5 (1), 1038

Kennerley, JA., Somveille, M., Hauber, ME., Richardson, NM., Manica, A., & Feeney, WE. (2022). The overlooked complexity of avian brood parasite–host relationships. Ecology Letters. 25 (8), 1889-1904

Frankish, CK., Manica, A., Clay, TA., Wood, AG., & Phillips, RA. (2022). Ontogeny of movement patterns and habitat selection in juvenile albatrosses. Oikos. 2022 (6), e09057

Buss, DL., Hearne, E., Loy, RHY., Manica, A., O’Connell, TC., & Jackson, JA. (2022). Evidence of resource partitioning between fin and sei whales during the twentieth-century whaling period. Marine Biology. 169 (11), 150

Horswill, C., Wood, MJ., & Manica, A. (2022). Temporal change in the contribution of immigration to population growth in a wild seabird experiencing rapid population decline. Ecography. 2022 (11), e05846

Cerasoni, JNò., Hallett, EY., Arous, EB., Beyer, RM., Krapp, M., Manica, A., & Scerri, EML. (2022). Archaeological sites and palaeoenvironments of Pleistocene West Africa. Journal of Maps. 18 (4), 630-637

Padilla-Iglesias, C., Blanco-Portillo, J., Ioannidis, A., Manica, A., Vinicius, L., & Migliano, A. (2022). Cultural Evolution of Central African hunter-gatherers reflects a deep history of interconnectivity. **.

Spaet, JLY., Butcher, PA., Manica, A., & Lam, CH. (2022). Spatial Dynamics and Fine-Scale Vertical Behaviour of Immature Eastern Australasian White Sharks (Carcharodon carcharias). Biology. 11 (12), 1689

Daversa, DR., Bosch, J., Manica, A., Garner, TWJ., & Fenton, A. (2022). Host Identity Matters—Up to a Point: The Community Context of Batrachochytrium dendrobatidis Transmission. The American Naturalist. 200 (4), 584-597

Pilowsky, JA., Manica, A., Brown, S., Rahbek, C., & Fordham, DA. (2022). Simulations of human migration into North America are more sensitive to demography than choice of palaeoclimate model. Ecological Modelling. 473, 110115

Riley, RJ., Gillie, ER., Savage, JL., Manica, A., & Boogert, NJ. (2022). Familiarity, personality, and foraging performance in three-spined sticklebacks. Behavioural Processes. 200, 104699

Will, M., Krapp, M., Stock, JT., & Manica, A. (2022). Combining paleoenvironmental and paleoanthropological datasets to understand human brain and body size evolution. Human Origins–Digital Future. 54

Beyer, RM., Manica, A., & Mora, C. (2021). Shifts in global bat diversity suggest a possible role of climate change in the emergence of SARS-CoV-1 and SARS-CoV-2. Science of the Total Environment. 767, 145413

Beyer, RM., Krapp, M., Eriksson, A., & Manica, A. (2021). Climatic windows for human migration out of Africa in the past 300,000 years. Nature Communications. 12 (1), 4889

Will, M., Krapp, M., Stock, JT., & Manica, A. (2021). Different environmental variables predict body and brain size evolution in Homo. Nature Communications. 12 (1), 4116

Jensen, MR., Sigsgaard, EE., Liu, S., Manica, A., Bach, SS., Hansen, MMøl., Møller, PR., & Thomsen, PF. (2021). Genome‐scale target capture of mitochondrial and nuclear environmental DNA from water samples. Molecular Ecology Resources. 21 (3), 690-702

Krapp, M., Beyer, RM., Edmundson, SL., Valdes, PJ., & Manica, A. (2021). A statistics-based reconstruction of high-resolution global terrestrial climate for the last 800,000 years. Scientific Data. 8 (1), 228

Paijmans, JLA., Barlow, A., Becker, MS., Cahill, JA., Fickel, J., Förster, DWG., Gries, K., Hartmann, S., Havmøller, RWøe., Henneberger, K., Kern, C., Kitchener, AC., Lorenzen, ED., Mayer, F., OBrien, SJ., Seth, Jv., Sinding, M-HS., Spong, Gör., Uphyrkina, O., Wachter, B., Westbury, MV., Dalén, L., Bhak, J., Manica, A., & Hofreiter, M. (2021). African and Asian leopards are highly differentiated at the genomic level. Current Biology. 31 (9), 1872-1882. e5

Thorup, K., Pedersen, L., Fonseca, RRD., Naimi, B., Nogués-Bravo, D., Krapp, M., Manica, A., Willemoes, M., Sjöberg, S., Feng, S., Chen, G., Rey-Iglesia, A., Campos, PF., Beyer, R., Araújo, MB., Hansen, AJ., Zhang, G., Tøttrup, AP., & Rahbek, C. (2021). Response of an Afro-Palearctic bird migrant to glaciation cycles. Proceedings of the National Academy of Sciences. 118 (52), e2023836118

Moodley, Y., Brunelli, A., Ghirotto, S., Klyubin, A., Maady, AS., Tyne, W., Muñoz-Ramirez, ZY., Zhou, Z., Manica, A., Linz, B., & Achtman, M. (2021). Helicobacter pylori’s historical journey through Siberia and the Americas. Proceedings of the National Academy of Sciences. 118 (25), e2015523118

Bentley, LK., Kato, A., Ropert-Coudert, Y., Manica, A., & Phillips, RA. (2021). Diving behaviour of albatrosses: implications for foraging ecology and bycatch susceptibility. Marine Biology. 168 (3), 36

Miller, EF., Green, RE., Balmford, A., Delser, PM., Beyer, R., Somveille, M., Leonardi, M., Amos, W., & Manica, A. (2021). Bayesian skyline plots disagree with range size changes based on species distribution models for Holarctic birds. Molecular Ecology. 30 (16), 3993-4004

Nanninga, GB., Pertzelan, A., Kiflawi, M., Holzman, R., Plakolm, I., & Manica, A. (2021). Treatment-level impacts of microplastic exposure may be confounded by variation in individual-level responses in juvenile fish. Journal of Hazardous Materials. 416, 126059

Jeon, S., Blazyte, A., Yoon, C., Ryu, H., Jeon, Y., Bhak, Y., Bolser, D., Manica, A., Shin, E-S., Cho, YS., Kim, BC., Ryoo, N., Choi, H., & Bhak, J. (2021). Regional TMPRSS2 V197M allele frequencies are correlated with COVID-19 case fatality rates. Molecules and Cells. 44 (9), 680-687

Horswill, C., Manica, A., Daunt, F., Newell, M., Wanless, S., Wood, M., & Matthiopoulos, J. (2021). Improving assessments of data‐limited populations using life‐history theory. Journal of Applied Ecology. 58 (6), 1225-1236

Frankish, CK., Cunningham, C., Manica, A., Clay, TA., Prince, S., & Phillips, RA. (2021). Tracking juveniles confirms fisheries-bycatch hotspot for an endangered albatross. Biological Conservation. 261, 109288

Schlebusch, CM., Loog, L., Groucutt, HS., King, T., Rutherford, A., Barbieri, C., Barbujani, G., Chikhi, L., Stringer, C., Jakobsson, M., Eriksson, A., Manica, A., Tishkoff, SA., Scerri, EML., Scally, A., Brierley, C., & Thomas, MG. (2021). Human origins in Southern African palaeo-wetlands? Strong claims from weak evidence. Journal of Archaeological Science. 130, 105374

Frankish, CK., Manica, A., Navarro, J., & Phillips, RA. (2021). Movements and diving behaviour of white‐chinned petrels: Diurnal variation and implications for bycatch mitigation. Aquatic Conservation: Marine and Freshwater Ecosystems. 31 (7), 1715-1729

Jeon, Y., Jeon, S., Blazyte, A., Kim, YJ., Lee, JJ., Bhak, Y., Cho, YS., Park, Y., Noh, E-K., Manica, A., Edwards, JS., Bolser, D., Kim, S., Lee, Y., Yoon, C., Lee, S., Kim, BC., Park, NH., & Bhak, J. (2021). Welfare genome project: A participatory Korean personal genome project with free health check-up and genetic report followed by counseling. Frontiers in Genetics. 12, 633731

Bonnet‐Lebrun, AS., Somveille, M., Rodrigues, ASL., & Manica, A. (2021). Exploring intraspecific variation in migratory destinations to investigate the drivers of migration. Oikos. 130 (2), 187-196

Delser, PM., Jones, ER., Hovhannisyan, A., Cassidy, L., Pinhasi, R., & Manica, A. (2021). A curated dataset of modern and ancient high-coverage shotgun human genomes. Scientific Data. 8 (1), 202

Daversa, DR., Manica, A., Cenis, H Bintanel., Lopez, P., Garner, TWJ., & Bosch, J. (2021). Alpine Newts (Ichthyosaura alpestris) Avoid Habitats Previously Used by Parasite-Exposed Conspecifics. Frontiers in Ecology and Evolution. 9, 636099

Delser, PM., Krapp, M., Beyer, R., Jones, ER., Miller, EF., Hovhannisyan, A., Parker, M., Siska, V., Vizzari, MT., Pearmain, EJ., Imaz-Rosshandler, I., Leonardi, M., Somma, GL., Hodgson, J., Tysall, E., Xue, Z., Cassidy, L., Bradley, DG., Eriksson, A., & Manica, A. (2021). Climate and mountains shaped human ancestral genetic lineages. BioRxiv. 2021.07. 13.452067

Miller, EF., Leonardi, M., Xue, Z., Beyer, R., Krapp, M., Somveille, M., Somma, GL., Delser, PM., & Manica, A. (2021). Post-glacial expansion dynamics, not refugial isolation, shaped the genetic structure of a migratory bird, the yellow warbler. BioRxiv. 2021.05. 10.443405

Beyer, R., & Manica, A. (2021). Global and country-level data of the biodiversity footprints of 175 crops and pasture. Data in Brief. 36, 106982

Moreau, L., Draily, C., Cordy, J-M., Boyle, K., Buckley, M., Gjesfjeld, E., Filzmoser, P., Borgia, V., Gibson, SA., Day, J., Beyer, R., Manica, A., Linden, MV., Grooth, MD., & Pirson, Sép. (2021). Adaptive trade-offs towards the last glacial maximum in north-western Europe: a multidisciplinary view from Walou Cave. Journal of Paleolithic Archaeology. 4, 1-41

Beyer, R., & Manica, A. (2021). Range sizes of the world’s mammals, birds, and amphibians from the mid-Holocene to the Industrial period. Animals. 11 (12), 3561

Warmuth, VM., Burgess, MD., Laaksonen, T., Manica, A., Mägi, M., Nord, A., Primmer, CR., Sætre, G-P., Winkel, W., & Ellegren, H. (2021). Major population splits coincide with episodes of rapid climate change in a forest-dependent bird. Proceedings of the Royal Society B. 288 (1962), 20211066

Miller, EF., & Manica, A. (2021). mtDNAcombine: tools to combine sequences from multiple studies. BMC Bioinformatics. 22, 1-15

Leonardi, M., Barbujani, G., & Manica, A. (2021). Genetic demography: What does it mean and how to interpret it, with a case study on the Neolithic transition. Ancient Connections in Eurasia, ed. by H. Reyes-Centeno and K. Harvati. 91-100

Miller, EF., Leonardi, M., Xue, Z., Beyer, R., Krapp, M., Somveille, M., Somma, GL., Delser, PM., & Manica, A. (2021). Post-glacial expansion dynamics, not refugial isolation, shaped the genetic structure of a migratory bird, the Yellow Warbler (Setophaga petechia). bioRxiv. 2021.05. 10.443405

Loog, L., Thalmann, O., Sinding, M‐HS., Schuenemann, VJ., Perri, A., Germonpré, M., Bocherens, H., Witt, KE., Castruita, JAS., Velasco, MS., Lundstrøm, IKC., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E‐L., Fedorov, S., Gasparyan, B., Kandel, AW., Lázničková‐Galetová, M., Napierala, H., Uerpmann, H‐P., Nikolskiy, PA., Pavlova, EY., Pitulko, VV., Herzig, K‐H., Malhi, RS., Willerslev, E., Hansen, AJ., Dobney, K., Gilbert, MTP., Krause, J., Larson, G., Eriksson, A., & Manica, A. (2020). Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology. 29 (9), 1596-1610

Jeon, S., Bhak, Y., Choi, Y., Jeon, Y., Kim, S., Jang, J., Jang, J., Blazyte, A., Kim, C., Kim, Y., Shim, J., Kim, N., Kim, YJ., Park, SG., Kim, J., Cho, YS., Park, Y., Kim, H-M., Kim, B-C., Park, N-H., Shin, E-S., Kim, BC., Bolser, D., Manica, A., Edwards, JS., Church, G., Lee, S., & Bhak, J. (2020). Korean Genome Project: 1094 Korean personal genomes with clinical information. Science Advances. 6 (22), eaaz7835

Beyer, RM., Krapp, M., & Manica, A. (2020). High-resolution terrestrial climate, bioclimate and vegetation for the last 120,000 years. Scientific Data. 7 (1), 236

Martiniano, R., Garrison, E., Jones, ER., Manica, A., & Durbin, R. (2020). Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph. Genome Biology. 21, 1-18

Beyer, RM., & Manica, A. (2020). Historical and projected future range sizes of the world’s mammals, birds, and amphibians. Nature Communications. 11 (1), 5633

Beyer, R., Krapp, M., & Manica, A. (2020). An empirical evaluation of bias correction methods for palaeoclimate simulations. Climate of the Past. 16 (4), 1493-1508

Bonnet-Lebrun, AS., Manica, A., & Rodrigues, ASL. (2020). Effects of urbanization on bird migration. Biological Conservation. 244, 108423

Betti, L., Beyer, RM., Jones, ER., Eriksson, A., Tassi, F., Siska, V., Leonardi, M., Delser, PM., Bentley, LK., Nigst, PR., Stock, JT., Pinhasi, R., & Manica, A. (2020). Climate shaped how Neolithic farmers and European hunter-gatherers interacted after a major slowdown from 6,100 bce to 4,500 bce. Nature Human Behaviour. 4 (10), 1004-1010

Spaet, JLY., Manica, A., Brand, CP., Gallen, C., & Butcher, PA. (2020). Environmental conditions are poor predictors of immature white shark Carcharodon carcharias occurrences on coastal beaches of eastern Australia. Marine Ecology Progress Series. 653, 167-179

Weber, JA., Park, SG., Luria, V., Jeon, S., Kim, H-M., Jeon, Y., Bhak, Y., Jun, JH., Kim, SW., Hong, WH., Lee, S., Cho, YS., Karger, A., Cain, JW., Manica, A., Kim, S., Kim, J-H., Edwards, JS., Bhak, J., & Church, GM. (2020). The whale shark genome reveals how genomic and physiological properties scale with body size. Proceedings of the National Academy of Sciences. 117 (34), 20662-20671

Somveille, M., Wikelski, M., Beyer, RM., Rodrigues, ASL., Manica, A., & Jetz, W. (2020). Simulation-based reconstruction of global bird migration over the past 50,000 years. Nature Communications. 11 (1), 801

Nanninga, GB., Scott, A., & Manica, A. (2020). Microplastic ingestion rates are phenotype-dependent in juvenile anemonefish. Environmental Pollution. 259, 113855

Frankish, CK., Phillips, RA., Clay, TA., Somveille, M., & Manica, A. (2020). Environmental drivers of movement in a threatened seabird: insights from a mechanistic model and implications for conservation. Diversity and Distributions. 26 (10), 1315-1329

Frankish, CK., Manica, A., & Phillips, RA. (2020). Effects of age on foraging behavior in two closely related albatross species. Movement Ecology. 8, 1-17

Nanninga, GB., Horswill, C., Lane, SM., Manica, A., & Briffa, M. (2020). Microplastic exposure increases predictability of predator avoidance strategies in hermit crabs. Journal of Hazardous Materials Letters. 1, 100005

Ning, C., Fernandes, D., Changmai, P., Flegontova, O., Yüncü, E., Maier, R., Altınışık, NE., Kassian, AS., Krause, J., Lalueza-Fox, C., Manica, A., Potter, BA., Robbeets, M., Sirak, K., Siska, V., Vajda, EJ., Vyazov, LA., Wang, K., Wang, L., Wu, X., Xiao, X., Zhang, F., Reich, D., Schiffels, S., Pinhasi, R., Cui, Y., & Flegontov, P. (2020). The genomic formation of First American ancestors in East and Northeast Asia. BioRxiv. 2020.10. 12.336628

Brooker, RM., Casey, JM., Cowan, Z-L., Sih, TL., Dixson, DL., Manica, A., & Feeney, WE. (2020). Domestication via the commensal pathway in a fish-invertebrate mutualism. Nature Communications. 11 (1), 6253

Bosch, J., Carrascal, LM., Manica, A., & Garner, TWJ. (2020). Significant reductions of host abundance weakly impact infection intensity of Batrachochytrium dendrobatidis. PLoS One. 15 (11), e0242913

Seidualy, M., Blazyte, A., Jeon, S., Bhak, Y., Jeon, Y., Kim, J., Eriksson, A., Bolser, D., Yoon, C., Manica, A., Lee, S., & Bhak, J. (2020). Decoding a highly mixed Kazakh genome. Human Genetics. 139, 557-568

Aivaz, AN., Manica, A., Neuhaus, P., & Ruckstuhl, KE. (2020). Picky predators and odd prey: colour and size matter in predator choice and zebrafish’s vulnerability–a refinement of the oddity effect. Ethology Ecology & Evolution. 32 (2), 135-147

Riley, RJ., Roe, TP., Gillie, ER., & Manica, A. (2020). The development of tactile social interactions in Corydoras aeneus larvae. Behaviour. 157 (6), 515-539

Geldmann, J., Manica, A., Burgess, ND., Coad, L., & Balmford, A. (2019). A global-level assessment of the effectiveness of protected areas at resisting anthropogenic pressures. Proceedings of the National Academy of Sciences. 116 (46), 23209-23215

Batchelor, CL., Margold, M., Krapp, M., Murton, DK., Dalton, AS., Gibbard, PL., Stokes, CR., Murton, JB., & Manica, A. (2019). The configuration of Northern Hemisphere ice sheets through the Quaternary. Nature Communications. 10 (1), 3713

Alves, JM., Carneiro, M., Cheng, JY., Matos, ALd., Rahman, MM., Loog, L., Campos, PF., Wales, N., Eriksson, A., Manica, A., Strive, T., Graham, SC., Afonso, S., Bell, DJ., Belmont, L., Day, JP., Fuller, SJ., Marchandeau, Sép., Palmer, WJ., Queney, G., Surridge, AK., Vieira, FG., McFadden, G., Nielsen, R., Gilbert, MTP., Esteves, PJ., Ferrand, N., & Jiggins, FM. (2019). Parallel adaptation of rabbit populations to myxoma virus. Science. 363 (6433), 1319-1326

Hanghøj, K., Moltke, I., Andersen, PA., Manica, A., & Korneliussen, TS. (2019). Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding. GigaScience. 8 (5), giz034

Somveille, M., Manica, A., & Rodrigues, ASL. (2019). Where the wild birds go: explaining the differences in migratory destinations across terrestrial bird species. Ecography. 42 (2), 225-236

González-Fortes, G., Tassi, F., Trucchi, E., Henneberger, K., Paijmans, JLA., Díez-del-Molino, D., Schroeder, H., Susca, RR., Barroso-Ruíz, C., Bermúdez, FJ., Barroso-Medina, C., Bettencourt, AMS., Sampaio, HA., Grandal-d’Anglade, A., Salas, A., Lombera-Hermida, Ad., Valcarce, RónFáb., Vaquero, M., Alonso, S., Lozano, M., Rodríguez-Alvarez, XéP., Fernández-Rodríguez, C., Manica, A., Hofreiter, M., & Barbujani, G. (2019). A western route of prehistoric human migration from Africa into the Iberian Peninsula. Proceedings of the Royal Society B: Biological Sciences. 286 (1895), 20182288

Kim, H-M., Weber, JA., Lee, N., Park, SG., Cho, YS., Bhak, Y., Lee, N., Jeon, Y., Jeon, S., Luria, V., Karger, A., Kirschner, MW., Jo, YJ., Woo, S., Shin, K., Chung, O., Ryu, J-C., Yim, H-S., Lee, J-H., Edwards, JS., Manica, A., Bhak, J., & Yum, S. (2019). The genome of the giant Nomura’s jellyfish sheds light on the early evolution of active predation. BMC Biology. 17, 1-12

Beyer, R., Krapp, M., & Manica, A. (2019). A systematic comparison of bias correction methods for paleoclimate simulations. Clim. Past Discuss. 11, 1-23

Kim, H-S., Jeon, S., Kim, C., Kim, YK., Cho, YS., Kim, J., Blazyte, A., Manica, A., Lee, S., & Bhak, J. (2019). Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. GigaScience. 8 (12), giz125

Feeney, WE., Brooker, RM., Johnston, LN., Gilbert, JDJ., Besson, M., Lecchini, D., Dixson, DL., Cowman, PF., & Manica, A. (2019). Predation drives recurrent convergence of an interspecies mutualism. Ecology Letters. 22 (2), 256-264

Cho, YS., Jun, JH., Kim, JA., Kim, H-M., Chung, O., Kang, S-G., Park, J-Y., Kim, H-J., Kim, S., Kim, H-J., Jang, J-h., Na, K-J., Kim, J., Park, SG., Lee, H-Y., Manica, A., Mindell, DP., Fuchs, Jérôm., Edwards, JS., Weber, JA., Witt, CC., Yeo, J-H., Kim, S., & Bhak, J. (2019). Raptor genomes reveal evolutionary signatures of predatory and nocturnal lifestyles. Genome Biology. 20, 1-11

Riley, RJ., Gillie, ER., Savage, JL., Boogert, NJ., Manica, A., & Jungwirth, A. (2019). The role of tactile interactions in flight responses in the Bronze Cory catfish (Corydoras aeneus). Ethology. 125 (11), 810-820

Lee, C-Y., Pike, DA., Tseng, H-Y., Hsu, J-Y., Huang, S-L., Shaner, P-JL., Liao, C-P., Manica, A., & Huang, W-S. (2019). When males live longer: Resource-driven territorial behavior drives sex-specific survival in snakes. Science Advances. 5 (4), eaar5478

Viganò, A., Manica, A., Piero, V Di., & Leonardi, M. (2019). Did going north give us migraine? An evolutionary approach on understanding latitudinal differences in migraine epidemiology. Headache: The Journal of Head and Face Pain. 59 (4), 632-634

Riley, RJ., Gillie, ER., Horswill, C., Johnstone, RA., Boogert, NJ., & Manica, A. (2019). Coping with strangers: how familiarity and active interactions shape group coordination in Corydoras aeneus. Royal Society Open Science. 6 (9), 190587

Beyer, R., Singarayer, JS., Stock, JT., & Manica, A. (2019). Environmental conditions do not predict diversification rates in the Bantu languages. Heliyon. 5 (10)

Krapp, M., Beyer, R., Edmundson, SL., Valdes, PJ., & Manica, A. (2019). A comprehensive climate history of the last 800 thousand years. Earth Arxiv.

Krapp, M., Beyer, R., Edmundson, SL., Valdes, PJ., & Manica, A. (2019). A comprehensive history of climate and habitat stability of the last 800,000 years. Climate of the Past Discussions. 2019, 1-29

Horswill, C., & Manica, A. (2019). California swordfish fishery: Maximizing the catch rate of a target species simultaneously minimizes bycatch rates. Proceedings of the National Academy of Sciences. 116 (15), 7172-7173

Betti, L., & Manica, A. (2019). Women’s birth canals are extremely variable in shape. The Science Breaker.

Scerri, EML., Thomas, MG., Manica, A., Gunz, P., Stock, JT., Stringer, C., Grove, M., Groucutt, HS., Timmermann, A., Rightmire, GP., d’Errico, F., Tryon, CA., Drake, NA., Brooks, AS., Dennell, RW., Durbin, R., Henn, BM., Lee-Thorp, J., Demenocal, P., Petraglia, MD., Thompson, JC., Scally, A., & Chikhi, Lès. (2018). Did our species evolve in subdivided populations across Africa, and why does it matter?. Trends in Ecology & Evolution. 33 (8), 582-594

Daly, KG., Delser, PM., Mullin, VE., Scheu, A., Mattiangeli, V., Teasdale, MD., Hare, AJ., Burger, J., Verdugo, MP., Collins, MJ., Kehati, R., Erek, CM., Bar-Oz, G., Pompanon, Fço., Cumer, T., Çakırlar, C., Mohaseb, AF., Decruyenaere, D., Davoudi, H., Çevik, Öz., Rollefson, G., Vigne, J-D., Khazaeli, R., Fathi, H., Doost, SB., Sorkhani, RR., Vahdati, AA., Sauer, EW., Kharanaghi, HA., Maziar, S., Gasparian, B., Pinhasi, R., Martin, L., Orton, D., Arbuckle, BS., Benecke, N., Manica, A., Horwitz, LK., Mashkour, M., & Bradley, DG. (2018). Ancient goat genomes reveal mosaic domestication in the Fertile Crescent. Science. 361 (6397), 85-88

Scheib, CL., Li, H., Desai, T., Link, V., Kendall, C., Dewar, G., Griffith, PW., Mörseburg, A., Johnson, JR., Potter, A., Kerr, SL., Endicott, P., Lindo, J., Haber, M., Xue, Y., Tyler-Smith, C., Sandhu, MS., Lorenz, JG., Randall, TD., Faltyskova, Z., Pagani, L., Danecek, P., O’Connell, TC., Martz, P., Boraas, AS., Byrd, BF., Leventhal, A., Cambra, R., Williamson, R., Lesage, L., Holguin, B., Soto, EY-D., Rosas, JT., Metspalu, M., Stock, JT., Manica, A., Scally, A., Wegmann, D., Malhi, RS., & Kivisild, T. (2018). Ancient human parallel lineages within North America contributed to a coastal expansion. Science. 360 (6392), 1024-1027

Betti, L., & Manica, A. (2018). Human variation in the shape of the birth canal is significant and geographically structured. Proceedings of the Royal Society B. 285 (1889), 20181807

Somveille, M., Rodrigues, ASL., & Manica, A. (2018). Energy efficiency drives the global seasonal distribution of birds. Nature Ecology & Evolution. 2 (6), 962-969

Fernandes, DM., Strapagiel, D., Borówka, P., Marciniak, Błaże., Żądzińska, Eżb., Sirak, K., Siska, V., Grygiel, R., Carlsson, J., Manica, A., Lorkiewicz, Wła., & Pinhasi, R. (2018). A genomic Neolithic time transect of hunter-farmer admixture in central Poland. Scientific Reports. 8 (1), 14879

Jolles, JW., Laskowski, KL., Boogert, NJ., & Manica, A. (2018). Repeatable group differences in the collective behaviour of stickleback shoals across ecological contexts. Proceedings of the Royal Society B: Biological Sciences. 285 (1872), 20172629

Daversa, DR., Manica, A., Bosch, J., Jolles, JW., & Garner, TWJ. (2018). Routine habitat switching alters the likelihood and persistence of infection with a pathogenic parasite. Functional Ecology. 32 (5), 1262-1270

Nanninga, GB., & Manica, A. (2018). Larval swimming capacities affect genetic differentiation and range size in demersal marine fishes. Marine Ecology Progress Series. 589, 1-12

Clay, TA., Pearmain, EJ., McGill, RAR., Manica, A., & Phillips, RA. (2018). Age‐related variation in non‐breeding foraging behaviour and carry‐over effects on fitness in an extremely long‐lived bird. Functional Ecology. 32 (7), 1832-1846

Planillo, A., Mata, C., Manica, A., & Malo, JE. (2018). Carnivore abundance near motorways related to prey and roadkills. The Journal of Wildlife Management. 82 (2), 319-327

Leonardi, M., Boschin, F., Giampoudakis, K., Beyer, RM., Krapp, M., Bendrey, R., Sommer, R., Boscato, P., Manica, A., Nogues-Bravo, D., & Orlando, L. (2018). Late Quaternary horses in Eurasia in the face of climate and vegetation change. Science Advances. 4 (7), eaar5589

Bonnet-Lebrun, AS., Phillips, RA., Manica, A., & Rodrigues, ASL. (2018). Quantifying individual specialization using tracking data: a case study on two species of albatrosses. Marine Biology. 165 (10), 152

Miller, EF., Manica, A., & Amos, W. (2018). Global demographic history of human populations inferred from whole mitochondrial genomes. Royal Society Open Science. 5 (8), 180543

Siska, V., Eriksson, A., Mehlig, B., & Manica, A. (2018). A metapopulation model of the spread of the Devil Facial Tumour Disease predicts the long term collapse of its host but not its extinction. arXiv preprint arXiv:. :1806.05449

Riley, RJ., Roe, T., Gillie, ER., Boogert, NJ., & Manica, A. (2018). The development of social interactions in Corydoras aeneus larvae. bioRxiv. 455188

Manica, A., & Siska, V. (2018). The ancient origin of some modern Asian populations revealed by ancient DNA. The Science Breaker.

Krapp, M., Edmundson, SL., & Manica, A. (2018). A linear regression model to reconstruct the climate of the last 800,000 years. EGU General Assembly Conference Abstracts. 11004

Nikolskiy, PA., Thalmann, O., Fedorov, S., Lázničková-Galetová, M., Uerpmann, HP., Sinding, M-HS., Herzig, K-H., Kandel, AW., Lundstrøm, I., Castruita, JéAS., Perri, AR., Germonpré, M., Gasparyan, B., Eriksson, A., Velasco, MS., Larson, G., Frantz, LAF., Napierala, H., Schuenemann, VJ., Gilbert, MTP., Pitulko, VV., Sonet, G., Jimenez, EL., Dobney, K., Malhi, RS., Schroeder, H., Manica, A., Wales, N., Krause, J., Budd, J., Bocherens, Hé., Hansen, AJ., Pavlova, EY., Witt, KE., Loog, L., & Willerslev, E. (2018). Modern wolves trace their origin to a late Pleistocene expansion from Beringia. (No Title).

Sikora, M., Seguin-Orlando, A., Sousa, VC., Albrechtsen, A., Korneliussen, T., Ko, A., Rasmussen, S., Dupanloup, I., Nigst, PR., Bosch, MD., Renaud, G., Allentoft, ME., Margaryan, A., Vasilyev, SV., Veselovskaya, EV., Borutskaya, SB., Deviese, T., Comeskey, D., Higham, T., Manica, A., Foley, R., Meltzer, DJ., Nielsen, R., Excoffier, L., Lahr, MM., Orlando, L., & Willerslev, E. (2017). Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers. Science. 358 (6363), 659-662

Jolles, JW., Boogert, NJ., Sridhar, VH., Couzin, ID., & Manica, A. (2017). Consistent individual differences drive collective behavior and group functioning of schooling fish. Current Biology. 27 (18), 2862-2868. e7

Jones, ER., Zarina, G., Moiseyev, V., Lightfoot, E., Nigst, PR., Manica, A., Pinhasi, R., & Bradley, DG. (2017). The Neolithic transition in the Baltic was not driven by admixture with early European farmers. Current Biology. 27 (4), 576-582

González-Fortes, G., Jones, ER., Lightfoot, E., Bonsall, C., Lazar, C., Grandal-d’Anglade, A., Garralda, MíaD., Drak, L., Siska, V., Simalcsik, A., Boroneanţ, A., Romaní, JRónV., Rodríguez, MV., Arias, P., Pinhasi, R., Manica, A., & Hofreiter, M. (2017). Paleogenomic evidence for multi-generational mixing between Neolithic farmers and Mesolithic hunter-gatherers in the Lower Danube Basin. Current Biology. 27 (12), 1801-1810. e10

Siska, V., Jones, ER., Jeon, S., Bhak, Y., Kim, H-M., Cho, YS., Kim, H., Lee, K., Veselovskaya, E., Balueva, T., Gallego-Llorente, M., Hofreiter, M., Bradley, DG., Eriksson, A., Pinhasi, R., Bhak, J., & Manica, A. (2017). Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago. Science Advances. 3 (2), e1601877

Williams, DR., Alvarado, F., Green, RE., Manica, A., Phalan, B., & Balmford, A. (2017). Land‐use strategies to balance livestock production, biodiversity conservation and carbon storage in Yucatán, Mexico. Global Change Biology. 23 (12), 5260-5272

Loog, L., Thomas, MG., Barnett, R., Allen, R., Sykes, N., Paxinos, PD., Lebrasseur, Oél., Dobney, K., Peters, J., Manica, A., Larson, G., & Eriksson, A. (2017). Inferring allele frequency trajectories from ancient DNA indicates that selection on a chicken gene coincided with changes in medieval husbandry practices. Molecular Biology and Evolution. 34 (8), 1981-1990

Daversa, DR., Fenton, A., Dell, AI., Garner, TWJ., & Manica, A. (2017). Infections on the move: how transient phases of host movement influence disease spread. Proceedings of the Royal Society B: Biological Sciences. 284 (1869), 20171807

Carneiro, APB., Bonnet-Lebrun, AS., Manica, A., Staniland, IJ., & Phillips, RA. (2017). Methods for detecting and quantifying individual specialisation in movement and foraging strategies of marine predators. Marine Ecology Progress Series. 578, 151-166

Savage, JL., Browning, LE., Manica, A., Russell, AF., & Johnstone, RA. (2017). Turn-taking in cooperative offspring care: by-product of individual provisioning behavior or active response rule?. Behavioral Ecology and Sociobiology. 71, 1-10

Clay, TA., Phillips, RA., Manica, A., Jackson, HA., & Brooke, ML. (2017). Escaping the oligotrophic gyre? The year-round movements, foraging behaviour and habitat preferences of Murphy’s petrels. Marine Ecology Progress Series. 579, 139-155

Loog, L., Lahr, M Mirazón., Kovacevic, M., Manica, A., Eriksson, A., & Thomas, MG. (2017). Estimating mobility using sparse data: Application to human genetic variation. Proceedings of the National Academy of Sciences. 114 (46), 12213-12218

Leonardi, M., Barbujani, G., & Manica, A. (2017). An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization. Scientific Reports. 7 (1), 3525

Bonnet-Lebrun, AS., Manica, A., Eriksson, A., & Rodrigues, ASL. (2017). Empirical phylogenies and species abundance distributions are consistent with preequilibrium dynamics of neutral community models with gene flow. Evolution. 71 (5), 1149-1163

Phillips, RA., Lewis, S., González-Solís, J., Daunt, F., Carneiro, APB., Bonnet-Lebrun, AS., Manica, A., Staniland, IJ., Bogdanova, MI., Butler, A., Wanless, S., Moe, B., Anker-Nilssen, T., Frederiksen, M., Boulinier, T., Chivers, LS., Christensen-Dalsgaard, S., Descamps, S., Harris, MP., Newell, M., Olsen, B., Shaw, D., Steen, H., Strøm, H., Thórarinsson, TL., Camprasse, ECM., Cherel, Y., Arnould, JPY., Hoskins, AJ., Bustamante, P., Bost, CA., Bemmelen, Rv., Moe, B., Hanssen, SA., Schmidt, NM., Hansen, J., Lang, J., Sittler, B., Bollache, L., Tulp, I., Klaassen, R., Gilg, O., Krietsch, J., Hahn, S., Kopp, M., Peter, HU., & Lisovski, S. (2017). Individual variability in seabird foraging and migration. Marine Ecology Progress Series. 578, 115-261

Betti, L., & Manica, A. (2017). Modern Variation in the Shape of the Birth Canal and the Effects of Climate and Population History. American Journal of Physical Anthropology. 162, 121-121

Cho, YS., Kim, H., Kim, H-M., Jho, S., Jun, JH., Lee, YJ., Chae, KS., Kim, CG., Kim, S., Eriksson, A., Edwards, JS., Lee, S., Kim, BC., Manica, A., Oh, T-K., Church, GM., & Bhak, J. (2017). Corrigendum: An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Nature Communications. 8

Malaspinas, A-S., Westaway, MC., Muller, C., Sousa, VC., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, JY., Crawford, JE., Heupink, TH., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, JL., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, TS., Levkivskyi, IP., Moreno-Mayar, JVíc., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, FA., Brucato, N., Brunak, Sør., Campos, PF., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, EA., McAllister, PJ., Mentzer, AJ., Metspalu, M., Migliano, AB., Murgha, L., Phipps, ME., Pomat, W., Reynolds, D., Ricaut, F-X., Siba, P., Thomas, MG., Wales, T., Wall, CM’r., Oppenheimer, SJ., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, MH., Foley, RA., Lahr, MMón., Bowern, C., Wall, JD., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, MS., Excoffier, L., Lambert, DM., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature. 538 (7624), 207-214

Pagani, L., Lawson, DJ., Jagoda, E., Mörseburg, A., Eriksson, A., Mitt, M., Clemente, F., Hudjashov, G., DeGiorgio, M., Saag, L., Wall, JD., Cardona, A., Mägi, R., Sayres, MAW., Kaewert, S., Inchley, C., Scheib, CL., Järve, M., Karmin, M., Jacobs, GS., Antao, T., Iliescu, FM., Kushniarevich, A., Ayub, Q., Tyler-Smith, C., Xue, Y., Yunusbayev, B., Tambets, K., Mallick, CB., Saag, L., Pocheshkhova, E., Andriadze, G., Muller, C., Westaway, MC., Lambert, DM., Zoraqi, G., Turdikulova, S., Dalimova, D., Sabitov, Z., Sultana, GNN., Lachance, J., Tishkoff, S., Momynaliev, K., Isakova, J., Damba, LD., Gubina, M., Nymadawa, P., Evseeva, I., Atramentova, L., Utevska, O., Ricaut, Fço-X., Brucato, N., Sudoyo, H., Letellier, T., Cox, MP., Barashkov, NA., Škaro, V., Mulahasanovic, L., Primorac, D., Sahakyan, H., Mormina, M., Eichstaedt, CA., Lichman, DV., Abdullah, S., Chaubey, G., Wee, JTS., Mihailov, E., Karunas, A., Litvinov, S., Khusainova, R., Ekomasova, N., Akhmetova, V., Khidiyatova, I., Marjanović, D., Yepiskoposyan, L., Behar, DM., Balanovska, E., Metspalu, A., Derenko, M., Malyarchuk, B., Voevoda, M., Fedorova, SA., Osipova, LP., Lahr, MMón., Gerbault, P., Leavesley, M., Migliano, AB., Petraglia, M., Balanovsky, O., Khusnutdinova, EK., Metspalu, E., Thomas, MG., Manica, A., Nielsen, R., Villems, R., Willerslev, E., Kivisild, T., & Metspalu, M. (2016). Genomic analyses inform on migration events during the peopling of Eurasia. Nature. 538 (7624), 238-242

Naidoo, R., Fisher, B., Manica, A., & Balmford, A. (2016). Estimating economic losses to tourism in Africa from the illegal killing of elephants. Nature Communications. 7 (1), 13379

Bartlett, LJ., Williams, DR., Prescott, GW., Balmford, A., Green, RE., Eriksson, A., Valdes, PJ., Singarayer, JS., & Manica, A. (2016). Robustness despite uncertainty: regional climate data reveal the dominant role of humans in explaining global extinctions of Late Quaternary megafauna. Ecography. 39 (2), 152-161

Kim, S., Cho, YS., Kim, H-M., Chung, O., Kim, H., Jho, S., Seomun, H., Kim, J., Bang, WY., Kim, C., An, J., Bae, CH., Bhak, Y., Jeon, S., Yoon, H., Kim, Y., Jun, JH., Lee, HJ., Cho, S., Uphyrkina, O., Kostyria, A., Goodrich, J., Miquelle, D., Roelke, M., Lewis, J., Yurchenko, A., Bankevich, A., Cho, J., Lee, S., Edwards, JS., Weber, JA., Cook, J., Kim, S., Lee, H., Manica, A., Lee, I., O’Brien, SJ., Bhak, J., & Yeo, J-H. (2016). Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biology. 17, 1-12

Gallego-Llorente, M., Connell, S., Jones, ER., Merrett, DC., Jeon, Y., Eriksson, A., Siska, V., Gamba, C., Meiklejohn, C., Beyer, R., Jeon, S., Cho, YS., Hofreiter, M., Bhak, J., Manica, A., & Pinhasi, R. (2016). The genetics of an early Neolithic pastoralist from the Zagros, Iran. Scientific Reports. 6 (1), 31326

Jolles, JW., Taylor, BA., & Manica, A. (2016). Recent social conditions affect boldness repeatability in individual sticklebacks. Animal Behaviour. 112, 139-145

Cho, YS., Kim, H., Kim, H-M., Jho, S., Jun, JH., Lee, YJ., Chae, KS., Kim, CG., Kim, S., Eriksson, A., Edwards, JS., Lee, S., Kim, BC., Manica, A., Oh, T-K., Church, GM., & Bhak, J. (2016). An ethnically relevant consensus Korean reference genome is a step towards personal reference genomes. Nature Communications. 7 (1), 1-13

Clay, TA., Manica, A., Ryan, PG., Silk, JRD., Croxall, JP., Ireland, L., & Phillips, RA. (2016). Proximate drivers of spatial segregation in non-breeding albatrosses. Scientific Reports. 6 (1), 29932

Pike, DA., Clark, RW., Manica, A., Tseng, HY., Hsu, JY., & Huang, WS. (2016). Surf and turf: predation by egg-eating snakes has led to the evolution of parental care in a terrestrial lizard. Scientific Reports. 6 (1), 22207

Carneiro, APB., Manica, A., Clay, TA., Silk, JRD., King, M., & Phillips, RA. (2016). Consistency in migration strategies and habitat preferences of brown skuas over two winters, a decade apart. Marine Ecology Progress Series. 553, 267-281

Nakayama, S., Harcourt, JL., Johnstone, RA., & Manica, A. (2016). Who directs group movement? Leader effort versus follower preference in stickleback fish of different personality. Biology Letters. 12 (5), 20160207

Jolles, JW., Manica, A., & Boogert, NJ. (2016). Food intake rates of inactive fish are positively linked to boldness in three‐spined sticklebacks Gasterosteus aculeatus. Journal of Fish Biology. 88 (4), 1661-1668

Carneiro, APB., Manica, A., & Phillips, RA. (2016). Long-term changes in population size, distribution and productivity of skuas (Stercorarius spp.) at Signy Island, South Orkney Islands. Polar Biology. 39, 617-625

Johnstone, RA., Manica, A., Fayet, AL., Stoddard, MC., Rodriguez-Gironés, MA., & Hinde, CA. (2016). Evidence for conditional cooperation: a response to Schlicht et al.. Behavioral Ecology. 27 (3), e6-e7

Chishti, HM., Manica, A., Ansar, M., Eriksson, A., Ajmal, M., & Hameed, A. (2016). Inability of the most commonly used forensic genetic markers to distinguish between samples belonging to different ethnicities of Pakistan with diverse genetic background. Forensic Science International: Genetics. 22, e7-e8

Elías-Wolff, F., Eriksson, A., Manica, A., & Mehlig, B. (2016). How Levins’ dynamics emerges from a Ricker metapopulation model. Theoretical Ecology. 9, 173-183

Balmford, A., Green, JMH., Anderson, M., Beresford, J., Huang, C., Naidoo, R., Walpole, M., & Manica, A. (2015). Walk on the wild side: estimating the global magnitude of visits to protected areas. PLoS Biology. 13 (2), e1002074

Raghavan, M., Steinrücken, M., Harris, K., Schiffels, S., Rasmussen, S., DeGiorgio, M., Albrechtsen, A., Valdiosera, C., Ávila-Arcos, MíaC., Malaspinas, A-S., Eriksson, A., Moltke, I., Metspalu, M., Homburger, JR., Wall, J., Cornejo, OE., Moreno-Mayar, JVíc., Korneliussen, TS., Pierre, T., Rasmussen, M., Campos, PF., Damgaard, PDB., Allentoft, ME., Lindo, J., Metspalu, E., Rodríguez-Varela, R., Mansilla, J., Henrickson, C., Seguin-Orlando, A., Malmström, H., Jr, TS., Shringarpure, SS., Moreno-Estrada, Aés., Karmin, M., Tambets, K., Bergström, A., Xue, Y., Warmuth, V., Friend, AD., Singarayer, J., Valdes, P., Balloux, F., Leboreiro, Ián., Vera, JL., Rangel-Villalobos, H., Pettener, D., Luiselli, D., Davis, LG., Heyer, E., Zollikofer, CPE., León, MSPd., Smith, CI., Grimes, V., Pike, K-A., Deal, M., Fuller, BT., Arriaza, B., Standen, V., Luz, MF., Ricaut, F., Guidon, N., Osipova, L., Voevoda, MI., Posukh, OL., Balanovsky, O., Lavryashina, M., Bogunov, Y., Khusnutdinova, E., Gubina, M., Balanovska, E., Fedorova, S., Litvinov, S., Malyarchuk, B., Derenko, M., Mosher, MJ., Archer, D., Cybulski, J., Petzelt, B., Mitchell, J., Worl, R., Norman, PJ., Parham, P., Kemp, BM., Kivisild, T., Tyler-Smith, C., Sandhu, MS., Crawford, M., Villems, R., Smith, DG., Waters, MR., Goebel, T., Johnson, JR., Malhi, RS., Jakobsson, M., Meltzer, DJ., Manica, A., Durbin, R., Bustamante, CD., Song, YS., Nielsen, R., & Willerslev, E. (2015). Genomic evidence for the Pleistocene and recent population history of Native Americans. Science. 349 (6250), aab3884

Jones, ER., Gonzalez-Fortes, G., Connell, S., Siska, V., Eriksson, A., Martiniano, R., McLaughlin, RL., Llorente, MG., Cassidy, LM., Gamba, C., Meshveliani, T., Bar-Yosef, O., Müller, W., Belfer-Cohen, A., Matskevich, Z., Jakeli, N., Higham, TFG., Currat, M., Lordkipanidze, D., Hofreiter, M., Manica, A., Pinhasi, R., & Bradley, DG. (2015). Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nature Communications. 6 (1), 8912

Karmin, M., Saag, L., Vicente, Már., Sayres, MAW., Järve, M., Talas, UG., Rootsi, S., Ilumäe, A-M., Mägi, R., Mitt, M., Pagani, L., Puurand, T., Faltyskova, Z., Clemente, F., Cardona, A., Metspalu, E., Sahakyan, H., Yunusbayev, B., Hudjashov, G., DeGiorgio, M., Loogväli, E-L., Eichstaedt, C., Eelmets, M., Chaubey, G., Tambets, K., Litvinov, S., Mormina, M., Xue, Y., Ayub, Q., Zoraqi, G., Korneliussen, TS., Akhatova, F., Lachance, J., Tishkoff, S., Momynaliev, K., Ricaut, Fço-X., Kusuma, P., Razafindrazaka, H., Pierron, D., Cox, MP., Sultana, GNN., Willerslev, R., Muller, C., Westaway, M., Lambert, D., Skaro, V., Kovačevic, L., Turdikulova, S., Dalimova, D., Khusainova, R., Trofimova, N., Akhmetova, V., Khidiyatova, I., Lichman, DV., & Isakova (2015). A recent bottleneck of Y chromosome diversity coincides with a global change in culture. Genome Research. 25 (4), 459-466

Llorente, MG., Jones, ER., Eriksson, A., Siska, V., Arthur, KW., Arthur, JW., Curtis, MC., Stock, JT., Coltorti, M., Pieruccini, P., Stretton, S., Brock, F., Higham, T., Park, Y., Hofreiter, MGBD., Bradley, DG., Bhak, J., Pinhasi, R., & Manica, A. (2015). Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa. Science. 350 (6262), 820-822

Somveille, M., Rodrigues, ASL., & Manica, A. (2015). Why do birds migrate? A macroecological perspective. Global Ecology and Biogeography. 24 (6), 664-674

Mamuneas, D., Spence, AJ., Manica, A., & King, AJ. (2015). Bolder stickleback fish make faster decisions, but they are not less accurate. Behavioral Ecology. 26 (1), 91-96

Jolles, JW., Fleetwood-Wilson, A., Nakayama, S., Stumpe, MC., Johnstone, RA., & Manica, A. (2015). The role of social attraction and its link with boldness in the collective movements of three-spined sticklebacks. Animal Behaviour. 99, 147-153

Gilbert, JDJ., & Manica, A. (2015). The evolution of parental care in insects: a test of current hypotheses. Evolution. 69 (5), 1255-1270

Aghakhanian, F., Yunus, Y., Naidu, R., Jinam, T., Manica, A., Hoh, BP., & Phipps, ME. (2015). Unravelling the genetic history of Negritos and indigenous populations of Southeast Asia. Genome Biology and Evolution. 7 (5), 1206-1215

Chung, O., Jin, S., Cho, YS., Lim, J., Kim, H., Jho, S., Kim, H-M., Jun, JH., Lee, HJ., Chon, A., Ko, J., Edwards, J., Weber, JA., Han, K., O’Brien, SJ., Manica, A., Bhak, J., & Paek, WK. (2015). The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old …. Genome Biology. 16, 1-11

Fayle, TM., Eggleton, P., Manica, A., Yusah, KM., & Foster, WA. (2015). Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants. Ecology Letters. 18 (3), 254-262

Alanis-Lobato, G., Cannistraci, CV., Eriksson, A., Manica, A., & Ravasi, T. (2015). Highlighting nonlinear patterns in population genetics datasets. Scientific Reports. 5 (1), 8140

Carneiro, APB., Manica, A., Trivelpiece, WZ., & Phillips, RA. (2015). Flexibility in foraging strategies of Brown Skuas in response to local and seasonal dietary constraints. Journal of Ornithology. 156, 625-633

Martin, SH., Eriksson, A., Kozak, KM., Manica, A., & Jiggins, CD. (2015). Speciation in Heliconius Butterflies: Minimal Contact Followed by Millions of Generations of Hybridisation. BioRxiv. 015800

Ilyas, M., Kim, J-S., Cooper, J., Shin, Y-A., Kim, H-M., Cho, YS., Hwang, S., Kim, H., Moon, J., Chung, O., Jun, JH., Rastogi, A., Song, S., Ko, J., Manica, A., Rahman, Z., Husnain, T., & Bhak, J. (2015). Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan. BMC genomics. 16, 1-8

Rasmussen, M., Anzick, SL., Waters, MR., Skoglund, P., DeGiorgio, M., Jr, TWS., Rasmussen, S., Moltke, I., Albrechtsen, A., Doyle, SM., Poznik, GD., Gudmundsdottir, V., Yadav, R., Malaspinas, A-S., V, SSW., Allentoft, ME., Cornejo, OE., Tambets, K., Eriksson, A., Heintzman, PD., Karmin, M., Korneliussen, TS., Meltzer, DJ., Pierre, TL., Stenderup, J., Saag, L., Warmuth, VM., Lopes, MC., Malhi, RS., Brunak, Sør., Sicheritz-Ponten, T., Barnes, I., Collins, M., Orlando, L., Balloux, F., Manica, A., Gupta, R., Metspalu, M., Bustamante, CD., Jakobsson, M., Nielsen, R., & Willerslev, E. (2014). The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature. 506 (7487), 225-229

Seguin-Orlando, A., Korneliussen, TS., Sikora, M., Malaspinas, A-S., Manica, A., Moltke, I., Albrechtsen, A., Ko, A., Margaryan, A., Moiseyev, V., Goebel, T., Westaway, M., Lambert, D., Khartanovich, V., Wall, JD., Nigst, PR., Foley, RA., Lahr, MM., Nielsen, R., Orlando, L., & Willerslev, E. (2014). Genomic structure in Europeans dating back at least 36,200 years. Science. 346 (6213), 1113-1118

Hutchison, J., Manica, A., Swetnam, R., Balmford, A., & Spalding, M. (2014). Predicting global patterns in mangrove forest biomass. Conservation Letters. 7 (3), 233-240

Yim, H-S., Cho, YS., Guang, X., Kang, SG., Jeong, J-Y., Cha, S-S., Oh, H-M., Lee, J-H., Yang, EC., Kwon, KK., Kim, YJ., Kim, TW., Kim, W., Jeon, JH., Kim, S-J., Choi, DH., Jho, S., Kim, H-M., Ko, J., Kim, H., Shin, Y-A., Jung, H-J., Zheng, Y., Wang, Z., Chen, Y., Chen, M., Jiang, A., Li, E., Zhang, S., Hou, H., Kim, TH., Yu, L., Liu, S., Ahn, K., Cooper, J., Park, S-G., Hong, CP., Jin, W., Kim, H-S., Park, C., Lee, K., Chun, S., Morin, PA., O’Brien, SJ., Lee, H., Kimura, J., Moon, DY., Manica, A., Edwards, J., Kim, BC., Kim, S., Wang, J., Bhak, J., Lee, HS., & Lee, J-H. (2014). Minke whale genome and aquatic adaptation in cetaceans. Nature Genetics. 46 (1), 88-92

Clemente, FJ., Cardona, A., Inchley, CE., Peter, BM., Jacobs, G., Pagani, L., Lawson, DJ., Antão, T., Vicente, Már., Mitt, M., DeGiorgio, M., Faltyskova, Z., Xue, Y., Ayub, Q., Szpak, M., Mägi, R., Eriksson, A., Manica, A., Raghavan, M., Rasmussen, M., Rasmussen, S., Willerslev, E., Vidal-Puig, A., Tyler-Smith, C., Villems, R., Nielsen, R., Metspalu, M., Malyarchuk, B., Derenko, M., & Kivisild, T. (2014). A selective sweep on a deleterious mutation in CPT1A in Arctic populations. The American Journal of Human Genetics. 95 (5), 584-589

Carranza, T., Balmford, A., Kapos, V., & Manica, A. (2014). Protected area effectiveness in reducing conversion in a rapidly vanishing ecosystem: the Brazilian Cerrado. Conservation Letters. 7 (3), 216-223

Rieux, A., Eriksson, A., Li, M., Sobkowiak, B., Weinert, LA., Warmuth, V., Ruiz-Linares, A., Manica, A., & Balloux, Fço. (2014). Improved calibration of the human mitochondrial clock using ancient genomes. Molecular Biology and Evolution. 31 (10), 2780-2792

Nanninga, GB., Saenz‐Agudelo, P., Manica, A., & Berumen, ML. (2014). Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea. Molecular Ecology. 23 (3), 591-602

Johnstone, RA., Manica, A., Fayet, AL., Stoddard, MC., Rodriguez-Gironés, MA., & Hinde, CA. (2014). Reciprocity and conditional cooperation between great tit parents. Behavioral Ecology. 25 (1), 216-222

Vail, AL., Manica, A., & Bshary, R. (2014). Fish choose appropriately when and with whom to collaborate. Current Biology. 24 (17), R791-R793

Eriksson, A., Elías-Wolff, F., Mehlig, B., & Manica, A. (2014). The emergence of the rescue effect from explicit within-and between-patch dynamics in a metapopulation. Proceedings of the Royal Society B: Biological Sciences. 281 (1780), 20133127

Carranza, T., Manica, A., Kapos, V., & Balmford, A. (2014). Mismatches between conservation outcomes and management evaluation in protected areas: A case study in the Brazilian Cerrado. Biological Conservation. 173, 10-16

Betti, L., Cramon-Taubadel, N von., Manica, A., & Lycett, SJ. (2014). The interaction of neutral evolutionary processes with climatically-driven adaptive changes in the 3D shape of the human os coxae. Journal of Human Evolution. 73, 64-74

Jolles, JW., Fleetwood-Wilson, A., Nakayama, S., Stumpe, MC., Johnstone, RA., & Manica, A. (2014). The role of previous social experience on risk-taking and leadership in three-spined sticklebacks. Behavioral Ecology. 25 (6), 1395-1401

Jun, JH., Cho, YS., Hu, H., Kim, H-M., Jho, S., Gadhvi, P., Park, KM., Lim, J., Paek, WK., Han, K., Manica, A., Edwards, JS., & Bhak, J. (2014). Whole genome sequence and analysis of the Marwari horse breed and its genetic origin. BMC Genomics. 15, 1-10

Eriksson, A., & Manica, A. (2014). The doubly conditioned frequency spectrum does not distinguish between ancient population structure and hybridization. Molecular Biology and Evolution. 31 (6), 1618-1621

Carneiro, APB., Manica, A., & Phillips, RA. (2014). Foraging behaviour and habitat use by brown skuas Stercorarius lonnbergi breeding at South Georgia. Marine Biology. 161, 1755-1764

Betti, L., Cramon-Taubadel, N von., Manica, A., & Lycett, SJ. (2014). Evidence for a substantial effect of neutral microevolutionary processes in shaping human pelvic variation at a global scale. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. 153, 78-79

Martin, SH., Dasmahapatra, KK., Nadeau, NJ., Salazar, C., Walters, JR., Simpson, F., Blaxter, M., Manica, A., Mallet, J., & Jiggins, CD. (2013). Genome-wide evidence for speciation with gene flow in Heliconius butterflies. Genome Research. 23 (11), 1817-1828

Vail, AL., Manica, A., & Bshary, R. (2013). Referential gestures in fish collaborative hunting. Nature Communications. 4 (1), 1765

Somveille, M., Manica, A., Butchart, SHM., & Rodrigues, ASL. (2013). Mapping global diversity patterns for migratory birds. PloS One. 8 (8), e70907

Betti, L., Cramon-Taubadel, N von., Manica, A., & Lycett, SJ. (2013). Global geometric morphometric analyses of the human pelvis reveal substantial neutral population history effects, even across sexes. PloS One. 8 (2), e55909

King, AJ., Fürtbauer, I., Mamuneas, D., James, C., & Manica, A. (2013). Sex-differences and temporal consistency in stickleback fish boldness. PLoS One. 8 (12), e81116

Coad, L., Schleicher, J., MILNER‐GULLAND, EJ., Marthews, TR., Starkey, M., Manica, A., Balmford, A., Mbombe, W., Bineni, TRD., & Abernethy, KA. (2013). Social and ecological change over a decade in a village hunting system, central Gabon. Conservation Biology. 27 (2), 270-280

Jolles, JW., King, AJ., Manica, A., & Thornton, A. (2013). Heterogeneous structure in mixed-species corvid flocks in flight. Animal Behaviour. 85 (4), 743-750

Nakayama, S., Stumpe, MC., Manica, A., & Johnstone, RA. (2013). Experience overrides personality differences in the tendency to follow but not in the tendency to lead. Proceedings of the Royal Society B: Biological Sciences. 280 (1769), 20131724

Warmuth, V., Manica, A., Eriksson, A., Barker, G., & Bower, M. (2013). Autosomal genetic diversity in non‐breed horses from eastern Eurasia provides insights into historical population movements. Animal Genetics. 44 (1), 53-61

Warmuth, VM., Campana, MG., Eriksson, A., Bower, MIM., Barker, G., & Manica, A. (2013). Ancient trade routes shaped the genetic structure of horses in eastern Eurasia. Molecular Ecology. 22 (21), 5340-5351

Montano, V., Eriksson, A., Manica, A., & Moodley, Y. (2013). Current Approaches in Spatial Genetics. Evolutionary Biology: Exobiology and Evolutionary Mechanisms. 217-229

Betti, L., Cramon-Taubadel, N von., Manica, A., & Lycett, SJ. (2013). Evidence for a substantial effect of neutral microevolutionary processes in shaping male and female human pelvic variation at a global scale.. American Journal of Physical Anthropology. 150, 80-80

Eriksson, A., & Manica, A. (2012). Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins. Proceedings of the National Academy of Sciences. 109 (35), 13956-13960

Warmuth, V., Eriksson, A., Bower, MA., Barker, G., Barrett, E., Hanks, BK., Li, S., Lomitashvili, D., Ochir-Goryaeva, M., Sizonov, GV., Soyonov, V., & Manica, A. (2012). Reconstructing the origin and spread of horse domestication in the Eurasian steppe. Proceedings of the National Academy of Sciences. 109 (21), 8202-8206

Eriksson, A., Betti, L., Friend, AD., Lycett, SJ., Singarayer, JS., Cramon-Taubadel, Nv., Valdes, PJ., Balloux, F., & Manica, A. (2012). Late Pleistocene climate change and the global expansion of anatomically modern humans. Proceedings of the National Academy of Sciences. 109 (40), 16089-16094

Prescott, GW., Williams, DR., Balmford, A., Green, RE., & Manica, A. (2012). Quantitative global analysis of the role of climate and people in explaining late Quaternary megafaunal extinctions. Proceedings of the National Academy of Sciences. 109 (12), 4527-4531

Nakayama, S., Harcourt, JL., Johnstone, RA., & Manica, A. (2012). Initiative, personality and leadership in pairs of foraging fish. PLoS One. 7 (5), e36606

Nakayama, S., Johnstone, RA., & Manica, A. (2012). Temperament and hunger interact to determine the emergence of leaders in pairs of foraging fish. PLoS One. 7 (8), e43747

Qutob, N., Balloux, F., Raj, T., Liu, H., Procé, SMd., Trowsdale, J., & Manica, A. (2012). Signatures of historical demography and pathogen richness on MHC class I genes. Immunogenetics. 64, 165-175

Oates, J., Manica, A., Bshary, R., & Grutter, AS. (2012). Relationship between roving behaviour and the diet and client composition of the cleaner fish Labroides bicolor. Journal of Fish Biology. 81 (1), 210-219

Prescott, GW., Williams, DR., Balmford, A., Green, RE., & Manica, A. (2012). Reply to Lima-Ribeiro et al.: Human arrival scenarios have little influence on interpretations of late Quaternary extinctions. Proceedings of the National Academy of Sciences. 109 (37), E2411-E2411

Rasmussen, M., Guo, X., Wang, Y., Lohmueller, KE., Rasmussen, S., Albrechtsen, A., Skotte, L., Lindgreen, S., Metspalu, M., Jombart, T., Kivisild, T., Zhai, W., Eriksson, A., Manica, A., Orlando, L., Vega, FMDL., Tridico, S., Metspalu, E., Nielsen, K., Ávila-Arcos, MíaC., Moreno-Mayar, JVíc., Muller, C., Dortch, J., Gilbert, MTP., Lund, O., Wesolowska, A., Karmin, M., Weinert, LA., Wang, B., Li, J., Tai, S., Xiao, F., Hanihara, T., Driem, GV., Jha, AR., Ricaut, Fço-X., Knijff, PD., Migliano, AB., Romero, IG., Kristiansen, K., Lambert, DM., Brunak, Sør., Forster, P., Brinkmann, B., Nehlich, O., Bunce, M., Richards, M., Gupta, R., Bustamante, CD., Krogh, A., Foley, RA., Lahr, MM., Balloux, F., Sicheritz-Pontén, T., Villems, R., Nielsen, R., Wang, J., & Willerslev, E. (2011). An Aboriginal Australian genome reveals separate human dispersals into Asia. Science. 334 (6052), 94-98

Johnstone, RA., & Manica, A. (2011). Evolution of personality differences in leadership. Proceedings of the National Academy of Sciences. 108 (20), 8373-8378

Warmuth, V., Eriksson, A., Bower, MA., Cañon, J., Cothran, G., Distl, O., Glowatzki-Mullis, M-L., Hunt, H., Luís, C., Oom, MdM., Yupanqui, IT., Ząbek, T., & Manica, A. (2011). European domestic horses originated in two Holocene refugia. PloS One. 6 (3), e18194

Tyler, EHM., Manica, A., Jiddawi, N., & Speight, MR. (2011). A role for partially protected areas on coral reefs: maintaining fish diversity?. Aquatic Conservation: Marine and Freshwater Ecosystems. 21 (3), 231-238

Eriksson, A., & Manica, A. (2011). Detecting and removing ascertainment bias in microsatellites from the HGDP-CEPH Panel. G. G3: Genes| Genomes| Genetics 1 (6), 479-488

Fayle, TM., & Manica, A. (2011). Bias in null model analyses of species co-occurrence: A response to Gotelli and Ulrich (2011). Ecological Modelling. 222 (7), 1340-1341

Balmford, A., Beresford, J., Green, J., Naidoo, R., Walpole, M., & Manica, A. (2011). Trends in nature-based tourism. Ecotourism and sustainable tourism: New perspectives and studies. 30-37

Ang, TZ., & Manica, A. (2011). Effect of the Presence of Subordinates on Dominant Female Behaviour and Fitness in Hierarchies of the Dwarf Angelfish Centropyge bicolor. Ethology. 117 (12), 1111-1119

Betti, L., Balloux, F., Hanihara, T., & Manica, A. (2010). The relative role of drift and selection in shaping the human skull. American Journal of Physical Anthropology. 141 (1), 76-82

Tanabe, K., Mita, T., Jombart, T., Eriksson, A., Horibe, S., Palacpac, N., Ranford-Cartwright, L., Sawai, H., Sakihama, N., Ohmae, H., Nakamura, M., Ferreira, MU., Escalante, AA., Prugnolle, F., Björkman, A., Färnert, A., Kaneko, A., Horii, T., Manica, A., Kishino, H., & Balloux, F. (2010). Plasmodium falciparum accompanied the human expansion out of Africa. Current Biology. 20 (14), 1283-1289

Coad, L., Abernethy, K., Balmford, A., Manica, A., Airey, L., & MILNER‐GULLAND, EJ. (2010). Distribution and use of income from bushmeat in a rural village, central Gabon. Conservation Biology. 24 (6), 1510-1518

Gilbert, JDJ., & Manica, A. (2010). Parental care trade-offs and life-history relationships in insects. The American Naturalist. 176 (2), 212-226

Rodrigues, ASL., Gray, CL., Crowter, BJ., Ewers, RM., Stuart, SN., Whitten, T., & Manica, A. (2010). A global assessment of amphibian taxonomic effort and expertise. BioScience. 60 (10), 798-806

Ang, TZ., & Manica, A. (2010). Aggression, segregation and stability in a dominance hierarchy. Proceedings of the Royal Society B: Biological Sciences. 277 (1686), 1337-1343

Lobo, AS., Balmford, A., Arthur, R., & Manica, A. (2010). Commercializing bycatch can push a fishery beyond economic extinction. Conservation Letters. 3 (4), 277-285

Harcourt, JL., Sweetman, G., Manica, A., & Johnstone, RA. (2010). Pairs of fish resolve conflicts over coordinated movement by taking turns. Current Biology. 20 (2), 156-160

Harcourt, JL., Biau, S., Johnstone, R., & Manica, A. (2010). Boldness and information use in three‐spined sticklebacks. Ethology. 116 (5), 440-447

Gilbert, JDJ., Thomas, LK., & Manica, A. (2010). Quantifying the benefits and costs of parental care in assassin bugs. Ecological Entomology. 35 (5), 639-651

Ang, TZ., & Manica, A. (2010). Unavoidable limits on group size in a body size-based linear hierarchy. Behavioral Ecology. 21 (4), 819-825

Fayle, TM., & Manica, A. (2010). Reducing over-reporting of deterministic co-occurrence patterns in biotic communities. Ecological Modelling. 221 (19), 2237-2242

Oates, J., Manica, A., & Bshary, R. (2010). The shadow of the future affects cooperation in a cleaner fish. Current Biology. 20 (11), R472-R473

Oates, J., Manica, A., & Bshary, R. (2010). Roving and Service Quality in the Cleaner Wrasse Labroides bicolor. Ethology. 116 (4), 309-315

Ang, TZ., & Manica, A. (2010). Benefits and Costs of Dominance in the Angelfish Centropyge bicolor. Ethology. 116 (9), 855-865

Kapos, V., AndreaManica, RA., Bubb, P., Carey, P., Entwistle, A., Hopkins, J., Mulliken, T., Safford, R., Stattersfield, A., Walpole, MJ., & Balmford, A. (2010). DefiningandMeasuring Success in Conservation. Trade-offs in Conservation: Deciding what to Save. 8, 73

Manica, A. (2010). Female scissortail sergeants (Pisces: Pomacentridae) use test eggs to choose good fathers. Animal Behaviour. 79 (1), 237-242

Balmford, A., Beresford, J., Green, J., Naidoo, R., Walpole, M., & Manica, A. (2009). A global perspective on trends in nature-based tourism. PLoS Biology. 7 (6), e1000144

Harcourt, JL., Ang, TZ., Sweetman, G., Johnstone, RA., & Manica, A. (2009). Social feedback and the emergence of leaders and followers. Current Biology. 19 (3), 248-252

Betti, L., Balloux, F., Amos, W., Hanihara, T., & Manica, A. (2009). Distance from Africa, not climate, explains within-population phenotypic diversity in humans. Proceedings of the Royal Society B: Biological Sciences. 276 (1658), 809-814

Balloux, F., Handley, LJL., Jombart, T., Liu, H., & Manica, A. (2009). Climate shaped the worldwide distribution of human mitochondrial DNA sequence variation. Proceedings of the Royal Society B: Biological Sciences. 276 (1672), 3447-3455

Ellwood, MD Farnon., Manica, A., & Foster, WA. (2009). Stochastic and deterministic processes jointly structure tropical arthropod communities. Ecology Letters. 12 (4), 277-284

Kapos, V., Balmford, A., Aveling, R., Bubb, P., Carey, P., Entwistle, A., Hopkins, J., Mulliken, T., Safford, R., Stattersfield, A., Walpole, M., & Manica, A. (2009). Outcomes, not implementation, predict conservation success. Oryx. 43 (3), 336-342

Harcourt, JL., Sweetman, G., Johnstone, RA., & Manica, A. (2009). Personality counts: the effect of boldness on shoal choice in three-spined sticklebacks. Animal Behaviour. 77 (6), 1501-1505

Tyler, EHM., Speight, MR., Henderson, P., & Manica, A. (2009). Evidence for a depth refuge effect in artisanal coral reef fisheries. Biological Conservation. 142 (3), 652-667

Balmford, A., Carey, P., Kapos, V., Manica, A., Rodrigues, ASL., Scharlemann, JörPW., & Green, RE. (2009). Capturing the many dimensions of threat: comment on Salafsky et al.. Conservation Biology. 23 (2), 482-487

Romero, IG., Manica, A., Goudet, J., Handley, LL., & Balloux, F. (2009). How accurate is the current picture of human genetic variation?. Heredity. 102 (2), 120-126

Harcourt, JL., Ang, TZ., Sweetman, G., Johnstone, RA., & Manica, A. (2009). Leadership, personality and social feedback. Communicative & Integrative Biology. 2 (4), 335-336

Gilbert, J., & Manica, A. (2009). Brood conspicuousness and clutch viability in male‐caring assassin bugs (Rhinocoris tristis). Ecological Entomology. 34 (2), 176-182

Manica, A., Betti, L., Balloux, F., Amos, W., & Hanihara, T. (2009). Ancient demography, not climate, explains within-population phenotypic diversity, in humans. American Journal of Physicsl Anthropology. 182-182

Schwarz, S., Morelli, G., Kusecek, B., Manica, A., Balloux, F., Owen, RJ., Graham, DY., Merwe, Svd., Achtman, M., & Suerbaum, S. (2008). Horizontal versus familial transmission of Helicobacter pylori. PLoS Pathogens. 4 (10), e1000180

Kapos, V., Balmford, A., Aveling, R., Bubb, P., Carey, P., Entwistle, A., Hopkins, J., Mulliken, T., Safford, R., Stattersfield, A., Walpole, M., & Manica, A. (2008). Calibrating conservation: new tools for measuring success. Conservation Letters. 1 (4), 155-164

Hodge, SJ., Manica, A., Flower, TP., & Clutton-Brock, TH. (2008). Determinants of reproductive success in dominant female meerkats. Journal of Animal Ecology. 92-102

Ang, TZ., O’luanaigh, C., Rands, SA., Balmford, A., & Manica, A. (2008). Quantifying the costs and benefits of protective egg coating in a Chrysomelid beetle. Ecological Entomology. 33 (4), 484-487

Manica, A. (2008). A zoologist traces flu across the globe. Nature. 453 (7194), 431-432

Scales, H., Balmford, A., & Manica, A. (2008). Observation du commerce de poissons de récifs vivant: Leçons tirées des expériences locales et mondiales. **.

Linz, B., Balloux, Fço., Moodley, Y., Manica, A., Liu, H., Roumagnac, P., Falush, D., Stamer, C., Prugnolle, F., Merwe, SWvd., Yamaoka, Y., Graham, DY., Perez-Trallero, E., Wadstrom, T., Suerbaum, S., & Achtman, M. (2007). An African origin for the intimate association between humans and Helicobacter pylori. Nature. 445 (7130), 915-918

Tan, J., Tyler, K., & Manica, A. (2007). Business-to-business adoption of eCommerce in China. Information & management. 44 (3), 332-351

Manica, A., Amos, W., Balloux, F., & Hanihara, T. (2007). The effect of ancient population bottlenecks on human phenotypic variation. Nature. 448 (7151), 346-348

Handley, LJL., Manica, A., Goudet, J., & Balloux, F. (2007). Going the distance: human population genetics in a clinal world. Trends in Genetics. 23 (9), 432-439

Balmford, A., Leader-Williams, N., Mace, GM., Manica, A., Walter, O., West, C., & Zimmermann, A. (2007). Message received? Quantifying the impact of informal conservation education on adults visiting UK zoos. Cambridge University Press.

Scales, H., Balmford, A., & Manica, A. (2007). Impacts of the live reef fish trade on populations of coral reef fish off northern Borneo. Proceedings of the Royal Society B: Biological Sciences. 274 (1612), 989-994

Mace, GM., Balmford, A., Leader-Williams, N., Manica, A., Walter, O., West, C., & Zimmermann, A. (2007). Measuring conservation success: assessing zoos’ contribution.. **.

Evans, SR., Finnie, M., & Manica, A. (2007). Shoaling preferences in decapod crustacea. Animal Behaviour. 74 (6), 1691-1696

Scales, H., Balmford, A., & Manica, A. (2007). Monitoring the live reef food fish trade: Lessons learned from local and global perspectives. SPC Live Reef Fish Information Bulletin. 17, 36-44

Scales, H., Balmford, A., & Manica, A. (2007). 2007, Proceedings, Biological Sciences/The Royal Society: Impacts of the live reef fish trade on populations of coral reef fish off northern Borneo.. Borneo Research Bulletin. 38, 266-267

Tyler, K., Manica, A., Tan, J., Zhao, L., & Lynch, J. (2007). SME’s adoption of B2B eCommerce in the North, South and West of China. Academy of Marketing Conference (AM. M2007)

Börger, L., Franconi, N., Michele, GD., Gantz, A., Meschi, F., Manica, A., Lovari, S., & Coulson, TIM. (2006). Effects of sampling regime on the mean and variance of home range size estimates. Journal of Animal Ecology. 1393-1405

Liu, H., Prugnolle, F., Manica, A., & Balloux, F. (2006). A geographically explicit genetic model of worldwide human-settlement history. The American Journal of Human Genetics. 79 (2), 230-237

Scales, H., Balmford, A., Liu, M., Sadovy, Y., & Manica, A. (2006). Keeping bandits at bay?. Science. 313 (5787), 612-614

Davis, DS., Stewart, SL., Manica, A., & Majerus, MEN. (2006). Adaptive preferential selection of female coccinellid hosts by the parasitoid wasp Dinocampus coccinellae (Hymenoptera: Braconidae). European Journal of Entomology. 103 (1), 41

Szmaragd, C., Foster, GR., Manica, A., Bartholomeusz, A., Nichols, RA., & Balloux, F. (2006). Genome-wide characterisation of hepatitis B mutations involved in clinical outcome. Heredity. 97 (6), 389-397

Ruckstuhl, KE., Manica, A., MacColl, ADC., Pilkington, JG., & Clutton-Brock, TH. (2006). The effects of castration, sex ratio and population density on social segregation and habitat use in Soay sheep. Behavioral Ecology and Sociobiology. 59, 694-703

Amos, W., & Manica, A. (2006). Global genetic positioning: evidence for early human population centers in coastal habitats. Proceedings of the National Academy of Sciences. 103 (3), 820-824

Pike, N., & Manica, A. (2006). The optimal balance of defence investment strategies in clonal colonies of social aphids. Behavioral Ecology and Sociobiology. 60, 803-814

Balmford, B., Balmford, J., Balmford, A., Blakeman, S., Manica, A., & Cowling, RM. (2006). Diurnal versus nocturnal pollination of Brunsvigia gregaria RA Dyer (Amaryllidaceae) at a coastal site. South African Journal of Botany. 72 (2), 291-294

Pike, N., & Manica, A. (2006). The basis of cowardice in social defenders. Ecological Modelling. 196 (3-4), 275-282

Luanaigh, C O., Ang, TZ., Manica, A., & Rands, SA. (2006). Non-random mating in the beetle Cryptocephalus hypochaeridis. Bulletin of Insectology. 59 (1), 11

Szmaragd, C., Foster, GR., Manica, A., Bartholomeusz, A., Nichols, RA., & Balloux, F. (2006). 400 Hepatitis B virus mutations involved in clinical outcome. Journal of Hepatology, S. S151

Prugnolle, F., Manica, A., Charpentier, M., Guégan, JF., Guernier, V., & Balloux, F. (2005). Pathogen-driven selection and worldwide HLA class I diversity. Current Biology. 15 (11), 1022-1027

Prugnolle, F., Manica, A., & Balloux, F. (2005). Geography predicts neutral genetic diversity of human populations. Current Biology. 15 (5), R159-R160

Manica, A., Prugnolle, F., & Balloux, F. (2005). Geography is a better determinant of human genetic differentiation than ethnicity. Human Genetics. 118, 366-371

Hockley, NJ., Jones, JPG., Andriahajaina, FB., Manica, A., Ranambitsoa, EH., & Randriamboahary, JA. (2005). When should communities and conservationists monitor exploited resources?. Biodiversity & Conservation. 14, 2795-2806

Reader, T., MacLeod, I., Elliott, PT., Robinson, OJ., & Manica, A. (2005). Inter-order interactions between flower-visiting insects: foraging bees avoid flowers previously visited by hoverflies. Journal of Insect Behavior. 18, 51-57

Thomas, LK., & Manica, A. (2005). Intrasexual competition and mate choice in assassin bugs with uniparental male and female care. Animal Behaviour. 69 (2), 275-281

Manica, A. (2004). Parental fish change their cannibalistic behaviour in response to the cost-to-benefit ratio of parental care. Animal Behaviour. 67 (6), 1015-1021

Balmford, A., Manica, A., Airey, L., Birkin, L., Oliver, A., & Schleicher, J. (2004). Hollywood, climate change, and the public. Science. 305 (5691), 1713-1713

Manica, A., & Johnstone, RA. (2004). The evolution of paternal care with overlapping broods. The American Naturalist. 164 (4), 517-530

Thomas, LK., & Manica, A. (2003). Filial cannibalism in an assassin bug. Animal Behaviour. 66 (2), 205-210

Manica, A. (2003). The effect of brood size and age on partial filial cannibalism in the scissortail sergeant. Journal of Fish Biology. 63 (1), 37-47

Manica, A. (2002). Filial cannibalism in teleost fish. Biological Reviews. 77 (2), 261-277

Manica, A. (2002). Alternative strategies for a father with a small brood: mate, cannibalise or care. Behavioral Ecology and Sociobiology. 51, 319-323

Manica, A. (2002). Filial cannibalism in a sergeant damselfish. University of Cambridge.

Manica, A., McMeechan, FK., & Foster, WA. (2001). An aggregation pheromone in the intertidal collembolan Anurida maritima. Entomologia Experimentalis et Applicata. 99 (3), 393-395

Manica, A., & Carter, RW. (2000). Morphological and fluorescence analysis of the Montastraea annularis species complex in Florida. Marine Biology. 137, 899-906

McMeechan, FK., Manica, A., & Foster, WA. (2000). Rhythms of activity and foraging in the intertidal insect Anurida maritima: coping with the tide. Journal of the Marine Biological Association of the United Kingdom. 80 (1 …

Manica, A., McMeechan, FK., & Foster, WA. (2000). Orientation in the intertidal salt-marsh collembolan Anurida maritima. Behavioral Ecology and Sociobiology. 47, 371-375

Sloggett, JJ., Manica, A., Day, MJ., & Majerus, MEN. (1999). Predation of ladybirds (Coleoptera: Coccinellidae) by wood ants, Formica rufa L.(Hymenoptera: Formicidae).. Entomologist’s Gazette. 50 (3), 217-221