For gt_pca, the following types of plots are available:
screeplot: a plot of the eigenvalues of the principal components (currently
it plots the singular value)
scores a scatterplot of the scores of each individual on two principal
components (defined by pc)
loadings a plot of loadings of all loci for a given component (chosen with pc)
Usage
# S3 method for class 'gt_pca'
autoplot(object, type = c("screeplot", "scores", "loadings"), k = NULL, ...)
Arguments
- object
an object of class gt_pca
- type
the type of plot (one of "screeplot", "scores" and "loadings")
- k
the principal components to be plotted: for scores, a pair of values
e.g. c(1,2); for loadings either one or more values.
- ...
not currently used.
Details
autoplot produces simple plots to quickly inspect an object. They are
not customisable; we recommend that you use ggplot2 to produce publication
ready plots.
