gt_pcadapt
objectsautoplot_gt_pcadapt.Rd
For gt_pcadapt
, the following types of plots are available:
qq
: a qunatile-quantile plot of the p-values from pcadapt
(wrapping bigsnpr::snp_qq()
)
manhattan
a manhattan plot of the p-values from pcadapt
(wrapping bigsnpr::snp_manhattan()
)
an object of class gt_pcadapt
the type of plot (one of "qq", and "mnahattan")
further arguments to be passed to bigsnpr::snp_qq()
or
bigsnpr::snp_manhattan()
.
a ggplot2
object
autoplot
produces simple plots to quickly inspect an object. They are
not customisable; we recommend that you use ggplot2
to produce publication
ready plots.