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Find transversions

Source: R/loci_transversions.R
loci_transversions.Rd

Use the loci table to define which loci are transversions

Usage

loci_transversions(.x, .col = "genotypes", ...)

# S3 method for class 'tbl_df'
loci_transversions(.x, .col = "genotypes", ...)

# S3 method for class 'vctrs_bigSNP'
loci_transversions(.x, .col = "genotypes", ...)

Arguments

.x

a vector of class vctrs_bigSNP (usually the genotype column of a gen_tibble object), or a gen_tibble.

.col

the column to be used when a tibble (or grouped tibble is passed directly to the function). This defaults to "genotypes" and can only take that value. There is no need for the user to set it, but it is included to resolve certain tidyselect operations.

...

other arguments passed to specific methods.

Value

a logical vector defining which loci are transversions

Examples

example_gt <- example_gt("gen_tbl")
example_gt %>% loci_transversions()
#> [1]  TRUE FALSE    NA  TRUE  TRUE  TRUE