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Show the loci information of a gen_tibble

Source: R/show_loci.R
show_loci.Rd

Extract and set the information on loci from a gen_tibble.

Usage

show_loci(.x, ...)

# S3 method for class 'tbl_df'
show_loci(.x, ...)

# S3 method for class 'vctrs_bigSNP'
show_loci(.x, ...)

show_loci(.x) <- value

# S3 method for class 'tbl_df'
show_loci(.x) <- value

# S3 method for class 'vctrs_bigSNP'
show_loci(.x) <- value

Arguments

.x

a vector of class vctrs_bigSNP (usually the genotype column of a gen_tibble object), or a gen_tibble.

...

currently unused.

value

a data.frame or tibble of loci information to replace the current one.

Value

a tibble::tibble of information (see gen_tibble for details on compulsory columns that will always be present)

Examples

example_gt <- load_example_gt("gen_tbl")

example_gt %>% show_loci()
#> # A tibble: 6 × 7
#>   big_index name  chromosome position genetic_dist allele_ref allele_alt
#>       <int> <chr> <fct>         <int>        <dbl> <chr>      <chr>     
#> 1         1 rs1   chr1              3            0 A          T         
#> 2         2 rs2   chr1              5            0 T          C         
#> 3         3 rs3   chr1             65            0 C          NA        
#> 4         4 rs4   chr1            343            0 G          C         
#> 5         5 rs5   chr2             23            0 C          G         
#> 6         6 rs6   chr2            456            0 T          A