Show the ploidy information of a gen_tibble

Extract the ploidy information from a gen_tibble. NOTE that this function does not return the ploidy level for each individual (that is obtained with indiv_ploidy); instead, it returns an integer which is either the ploidy level of all individuals (e.g. 2 indicates all individuals are diploid), or a 0 to indicate mixed ploidy. The special case of -2 is used to indicate the presence of pseudo-haploids (i.e. individuals with a ploidy of 2 but for which we only have information for one allele; the dosages are 0 or 2 for these individuals).

Usage

show_ploidy(.x, ...)

# S3 method for class 'tbl_df'
show_ploidy(.x, ...)

# S3 method for class 'vctrs_bigSNP'
show_ploidy(.x, ...)

Arguments

.x

a vector of class vctrs_bigSNP (usually the genotype column of a gen_tibble object), or a gen_tibble.

...

currently unused.

Value

the ploidy (0 indicates mixed ploidy)

Examples

example_gt <- example_gt("gen_tbl")

example_gt %>% show_ploidy()
#> [1] 2